I'm used to XT6 timing belts marks, which you can get dead on. Am I expecting too much from the EA82 marks?
On the drivers side it seems about 1/2 to the left or 1/2 to the right, it won't line up perfectly. It barely runs on the "1/2 to the right" placement, so it's obviously the left.
When I line the cam hole up perfectly the 3 lines on the flywheel are definitely out of the picture.
Last EA82 I did was last summer and I don't recall having this problem.